Here’s a list of issues:

• <template name>/navigation/metaNavigation/paragraphs - Since 4.5 area resides in /area/branding/areas/metaNavigation. This node is on shopHome, shopShoppingCart, shopProductDetail, shopProductCategory, shopConfirmationPage, shopProductsSearchResult, shopProductKeywordSearchResult
• areas/sectionHeader is defined and has no dialog property. You can edit the component in the /content/intro area in the Page Header component on stkHome (see below). This node is on shopHome, shopShoppingCart, shopProductDetail, shopConfirmationPage, shopFormStep, shopCheckoutForm.
• areas/main/areas/intro is defined and references standard-templating-kit:pages/section/stkSectionHeader dialog instead on an Intro dialog. This dialog is referenced on shopShoppingCart, shopProductDetail, shopProductCategory, shopConfirmationPage, shopProductSearchResult, shopProductKeywordResult.
• stkHome in extras1/2 area shopExtrasCart and shopExtrasProductSearch are available for selection in the dialog but do not render on the page.

tested on magnolia-5.2.4/magnolia-module-shop-2.0.1-SNAPSHOT (April 22)